NBISweden / AGAT / 140
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DEFAULT BRANCH: master
Ran
Jobs 3
Files 51
Run time 20s
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Merge pull request #41 from NBISweden/l1standalone

deal with standalone and top features + add log + modify call of many functions

1389 of 1389 new or added lines in 30 files covered. (100.0%)

7793 of 9921 relevant lines covered (78.55%)

6797.65 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
82.79
 0.0% bin/agat_convert_sp_gff2gtf.pl
1
87.18
 0.0% bin/agat_sp_filter_incomplete_gene_coding_models.pl
1
58.68
 0.0% bin/agat_sp_fix_longest_ORF.pl
1
72.94
 0.0% bin/agat_sq_add_locus_tag.pl
4
82.1
 0.0% bin/agat_sp_manage_IDs.pl
5
80.74
 0.0% bin/agat_sp_compare_two_annotations.pl
6
90.38
 0.0% bin/agat_convert_sp_gff2tsv.pl
6
81.3
 0.0% bin/agat_sp_filter_feature_by_attribute_presence.pl
6
75.0
 0.0% bin/agat_sp_filter_feature_by_attribute_value.pl
9
88.81
 0.0% lib/AGAT/Utilities.pm
10
86.11
 0.0% bin/agat_sp_separate_by_record_type.pl
11
86.59
 0.0% lib/AGAT/OmniscientJson.pm
34
85.35
 0.0% lib/AGAT/OmniscientStat.pm
48
91.42
 0.0% lib/AGAT/OmniscientI.pm
49
63.59
 0.0% lib/AGAT/OmniscientTool.pm

Uncovered Existing Lines

Lines Coverage ∆ File
1
94.37
 0.0% bin/agat_sp_add_introns.pl
1
87.1
 0.0% bin/agat_sp_ensembl_output_style.pl
1
95.19
 0.0% bin/agat_sp_filter_by_locus_distance.pl
1
87.18
 0.0% bin/agat_sp_filter_incomplete_gene_coding_models.pl
1
87.88
 0.0% bin/agat_sp_fix_cds_phases.pl
3
81.3
 0.0% bin/agat_sp_filter_feature_by_attribute_presence.pl
3
88.81
 0.0% lib/AGAT/Utilities.pm
4
90.38
 0.0% bin/agat_convert_sp_gff2tsv.pl
5
85.85
 0.0% bin/agat_sp_filter_by_ORF_size.pl
6
86.67
 0.0% bin/agat_convert_sp_gxf2gxf.pl
9
75.0
 0.0% bin/agat_sp_filter_feature_by_attribute_value.pl
9
72.94
 0.0% bin/agat_sq_add_locus_tag.pl
14
76.52
 0.0% bin/agat_sp_manage_introns.pl
16
82.1
 0.0% bin/agat_sp_manage_IDs.pl
17
80.74
 0.0% bin/agat_sp_compare_two_annotations.pl
21
75.69
 0.0% bin/agat_sp_sensitivity_specificity.pl
26
85.35
 0.0% lib/AGAT/OmniscientStat.pm
30
76.74
 0.0% bin/agat_sp_functional_statistics.pl
31
88.84
 0.0% bin/agat_sp_fix_fusion.pl
36
82.79
 0.0% bin/agat_convert_sp_gff2gtf.pl
76
69.15
 0.0% lib/AGAT/OmniscientO.pm
80
91.42
 0.0% lib/AGAT/OmniscientI.pm
348
63.59
 0.0% lib/AGAT/OmniscientTool.pm
Jobs
ID Job ID Ran Files Coverage
1 140.1 51
78.55
 Travis Job 140.1
2 140.2 51
78.55
 Travis Job 140.2
3 140.3 51
78.54
 Travis Job 140.3
Source Files on build 140