broadinstitute / oncotator / 409
66%

DEFAULT BRANCH: develop
Ran
Jobs 1
Files 186
Run time 32s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
409

push

travis-ci

lbergelson 
Merge pull request #327 from broadinstitute/issue-325-OxoG_changes

Issue 325 First set of OxoG changes (allowing annotation overwriting and intelligent overwriting in TCGA MAF outputs)

527 of 527 new or added lines in 46 files covered. (100.0%)

14060 of 19678 relevant lines covered (71.45%)

0.71 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
18.18
 1.52% oncotator/output/GeneListOutputRenderer.py
1
61.35
 4.26% test/AnnotatorTest.py
1
93.75
 test/FieldMapCreatorTest.py
1
60.66
 0.66% test/GenericGeneProteinPositionDatasourceTest.py
1
50.0
 1.85% test/GenericGenomicMutationDatasourceTest.py
1
96.3
 0.12% test/OnpCombinerTest.py
2
66.93
 0.52% oncotator/Annotator.py
2
73.33
 0.36% test/CosmicDatasourceTest.py
3
94.55
 oncotator/utils/FieldMapCreator.py
3
66.09
 0.05% oncotator/utils/RunSpecification.py
7
70.65
 2.08% oncotator/utils/RunSpecificationFactory.py
11
76.09
 0.06% test/EnsemblTranscriptDatasourceTest.py
15
14.16
 0.25% test/GafDatasourceTest.py
16
0.0
 0.0% oncotator/Oncotator.py
25
68.93
 -5.89% test/TcgaMafOutputRendererTest.py
39
5.28
 0.11% test/HgvsChangeTransformerTest.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
88.66
 0.0% oncotator/datasources/TabixIndexedTsvDatasource.py
1
66.09
 0.05% oncotator/utils/RunSpecification.py
3
0.0
 0.0% oncotator/Oncotator.py
Jobs
ID Job ID Ran Files Coverage
1 409.1 186
71.45
 Travis Job 409.1
Source Files on build 409
Coverage ∆ File Lines Relevant Covered Missed Hits/Line