broadinstitute / oncotator / 402
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Jobs 1
Files 185
Run time 15s
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402

Pull #327

travis-ci

LeeTL1220 
Minor doc change.
Pull Request #327: Issue 325 First set of OxoG changes (allowing annotation overwriting and intelligent overwriting in TCGA MAF outputs)

14087 of 19712 relevant lines covered (71.46%)

0.71 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.67
 0.11% test/CacheManagerTest.py
1
99.24
 0.01% test/DatasourceInstallUtilsTest.py
1
98.21
 0.03% test/MutationDataTest.py
1
99.57
 0.0% test/MutUtilsTest.py
1
98.36
 0.03% test/ReferenceDatasourceTest.py
1
96.43
 0.13% test/SimpleBedOutputRendererTest.py
2
97.56
 0.16% oncotator/input/MafliteInputMutationCreator.py
2
90.7
 0.22% test/BigWigTest.py
3
96.8
 0.03% oncotator/input/OnpQueue.py
4
77.42
 0.37% test/GenericTranscriptDatasourceTest.py
4
96.3
 0.12% test/OnpCombinerTest.py
5
73.33
 0.36% test/CosmicDatasourceTest.py
5
82.86
 0.25% test/TranscriptToUniProtProteinPositionTransformingDatasourceTest.py
6
50.0
 1.85% test/GenericGenomicMutationDatasourceTest.py
7
88.66
 0.0% oncotator/datasources/TabixIndexedTsvDatasource.py
7
96.58
 0.05% oncotator/input/VcfInputMutationCreator.py
7
70.13
 0.39% test/DatasourceFactoryTest.py
7
54.72
 0.87% test/GenericGeneDataSourceTest.py
8
96.96
 -2.65% test/VariantClassifierTest.py
9
59.15
 0.0% oncotator/utils/OncotatorCLIUtils.py
9
60.66
 0.66% test/GenericGeneProteinPositionDatasourceTest.py
10
90.65
 0.21% oncotator/output/TcgaMafOutputRenderer.py
14
75.0
 0.53% oncotator/MutationData.py
18
69.7
 0.15% test/TcgaVcfOutputRendererTest.py
23
70.65
 2.08% oncotator/utils/RunSpecificationFactory.py
26
84.45
 0.34% oncotator/utils/MutUtils.py
26
66.09
 0.05% oncotator/utils/RunSpecification.py
40
61.35
 4.26% test/AnnotatorTest.py
40
76.09
 0.06% test/EnsemblTranscriptDatasourceTest.py
47
0.0
 0.0% oncotator/Oncotator.py
48
66.93
 0.52% oncotator/Annotator.py
62
69.91
 -4.92% test/TcgaMafOutputRendererTest.py
64
14.16
 0.25% test/GafDatasourceTest.py
86
5.28
 0.11% test/HgvsChangeTransformerTest.py
Jobs
ID Job ID Ran Files Coverage
1 402.1 185
71.46
 Travis Job 402.1
Source Files on build 402
Coverage ∆ File Lines Relevant Covered Missed Hits/Line