98: 63%

Ran 18 Jun 2015 10:30AM UTC

Jobs 1

Files 111

Run time 8s

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Build # 285

Build Type

push

travis-ci

Committed by

muffato

Commit Message

Merge remote-tracking branch 'ensembl-github/feature/update_pipeline' into master

* ensembl-github/feature/update_pipeline: (24 commits)
  bugfix: corrected path for mpiexec.hydra
  Added extra_raxml_args flag to the command line.
  Changed RAxML binary and added examl_ptiles flag.
  Bugfix: Change in the resource class for MPI jobs.
  Update in command line, no need to load icc module.
  Updated command line to run mpich3 lib.
  Bugfix: input_clusterset_id should be hardcoded.
  Added parameter for the ortho_tree analysis.
  bugfix: added comma at the end on line.
  bugfix: change in the command line
  bugfix: missing_members should be a hash instead of vector.
  Used gene_tree should be the notung at this stage.
  Changes in batch_sizes, raxml_decision logic.
  Added store_homologies=0 to avoid storing all the homologies.
  Added a getter & control to deal with empty features.
  bugfix: checking for the scalar gives a logic error.
  Added the right output_clusterset_id.
  bugfix: $self->param was missing the '$' symbol.
  We needed to move resources to TreeFam pipe_config.
  Changes the databases for running release e80.
  ...

Conflicts:
	modules/Bio/EnsEMBL/Compara/GenomeMF.pm
	modules/Bio/EnsEMBL/Compara/PipeConfig/Example/TFProteinTrees_conf.pm

Run Details

8603 of 14288 relevant lines covered (60.21%)

624.87 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	285.1 (COVERALLS=true)	18 Jun 2015 10:30AM UTC	0	60.21	Travis Job 285.1

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