Clinical-Genomics / scout / 6179

84%

push

travis-ci

support for CRAM alignments (#1549)

* support for cram alignments

* test something

* test igv supported web snapshot distro

* fix index not found error

* fix typo

* generalize function

* rem´name function

* other typo

* rename variable

* forgot a comma

* updared changelog and added a test

* fix typo in test

* small improvements

* handle the missing of a bam/cram or the index

* prevent bug, just in case

* test all cases of align index searching and allow samples with no track

* remove empty space

* typos

* remove unused dependency

20 of 20 new or added lines in 3 files covered. (100.0%)

9539 of 12346 relevant lines covered (77.26%)

0.77 hits per line