maljovec / topopy / 128

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Moving to New NGLPy API (#30)

* Critical Bug fix: Reversing edges on negated Morse complex built for Morse-Smale construction.
* Making things compatible with the uncertain branch of NGLPy
* Adding requirements file with pinned dependencies
* Removing 2.7 build and adding more modern pythons.
* Closes #27 and uses requirements file to generate prerequisite installations
* Bumping version number
* Updating to point to new NGL API and bumping major version of topopy since it will have a breaking API change as well
* Fixing deprecation warning
* Fixing tests
* Adding requirements.txt to the Manifest file
* Cleaning documentation
* Pinning to working version of nglpy installation.
* Documenting all public functions using numpy style docstrings.
* Adding linker arg for MacOS builds
* Disabling 3.5 due to use of f-strings
* Testing staging deploy script.
* Enabling flake and mypy checks on CI

324 of 333 branches covered (97.3%)

Branch coverage included in aggregate %.

58 of 58 new or added lines in 6 files covered. (100.0%)

678 of 687 relevant lines covered (98.69%)

0.99 hits per line