2081
93%
master: 93%

Ran 31 Oct 2019 05:02PM UTC

Jobs 1

Files 30

Run time 3s

Badge

Embed ▾

pending completion

Build # 2081

Build Type

push

travis-ci

Committed by

mlin

Commit Message

improve handling of DeepVariant non-called records

Compared to other callers, DeepVariant generates more non-called (./.) gVCF records to express uncertainty; including both reference bands and variant records. In 497277a5 we made sure to preserve the non-called status for reference bands, albeit in a heavy-handed way that censored all the QC fields (RNC=PartialData).

Here we introduce a new RNC InputNonCalled, used for both reference bands and variant records when applicable, which preserves the associated QC fields in the pVCF.

Run Details

4303 of 4607 relevant lines covered (93.4%)

947627.76 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
2	2081.2 (TRAVIS_BUILD_TYPE=Coverage)	31 Oct 2019 05:02PM UTC	30	93.4	Travis Job 2081.2

dnanexus-rnd / GLnexus / 2081
93%
master: 93%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 2081

dnanexus-rnd / GLnexus / 2081 93% master: 93%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 2081

dnanexus-rnd / GLnexus / 2081
93%
master: 93%

README BADGES
x