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Adding a QIIME2 plugin for sourcetracker2 + tests for the cli and q2 plugin (#125)

* add gibbs helper that can be used in both q2 and standalone click cmd line

* convert click cmd line function to take helper function

* one return not needed

* refactor cli for QIIME

* add qiime2 plugin intial

* untested q2plugin caching without failure

* passing pep

* adding in a testing make file

* test fails if output dataframe columns are not sorted

* add _cli tests

* pep pass

* add plugin and tests passing plus pep

* update chnagelog

* add doc about missing feature in q2

* typo fix

* add travis + ci for QIIME2

* fix numpy pip issues with q2

* fixing numpy install issues with biom

* explicit numpy install

* more numpy issues

* fixing travis issues

* add all tests in one command + cover

* add coverage lines missing

* duplicate report sections plus tabs

* add per_sink_feature_assignments for testing

* remove unnecessary lines for now

* add the per_sink_feature_assigments for QIIME2 output

* add mock taxa table for tiny-test

* convert output to convention shape (samples in columns and features in rows)

* fixing convention flipping

* adding visuals for both per sink features and source tracking

* add visual tests

* flake8 passing

* add tutorial notebook

* update tutorial

* fix some deprecated pandas

* fix-delim for per sink and remove any QIIME depend in standalone CLI

* update tutorial for metadata

* add SinkSourceMapDirectoryFormat and refactor code to use it

* add tests for transformer

* oops forgot to test style thanks travis

151 of 159 branches covered (94.97%)

247 of 247 new or added lines in 9 files covered. (100.0%)

504 of 520 relevant lines covered (96.92%)

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