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broadinstitute / viral-ngs / 1016
23%

Build:
DEFAULT BRANCH: master
Ran 29 Oct 2019 07:00PM UTC
Jobs 2
Files 43
Run time 3min
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handle when gatk jar is in subdir (#997)

* handle when gatk jar is in subdir

gatk 3.8-1 is packed as a bz2 such that when extracted the jar file is found within a subdirectory, in contrast to earlier versions where it is at the top level. This commit searches any subdirs for the jar and moves it to the top level of the extracted path if found

* alternative way of moving jar

alternative way of moving jar, since womtool seems to dislike using find's '{}' as the string to substitute

296 of 2705 branches covered (10.94%)

1458 of 6277 relevant lines covered (23.23%)

0.92 hits per line

Jobs
ID Job ID Ran Files Coverage
5 1016.5 (TRAVIS_JOB=test_py36) 29 Oct 2019 07:04PM UTC 0
72.79
Travis Job 1016.5
6 1016.6 (TRAVIS_JOB=test_snakemake) 29 Oct 2019 07:00PM UTC 0
23.23
Travis Job 1016.6
Source Files on build 1016
Detailed source file information is not available for this build.
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