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fix(core): disable auto flushing by default [BC] (#79)

Having auto flushing enabled by default was a poor choice, as it could produce multiple small transactions without user knowing it. EM.persist() now won't flush anything (by default), so ORM will behave the same way as others like hibernate or doctrine.

BREAKING CHANGES:
With default `autoFlush` value, em.persist(), em.removeEntity() and em.remove(e: IEntity) will not flush the EM. Either use second flush parameter or flush method variants (like em.removeAndFlush()).

Closes #63

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