bigdatagenomics / adam / 3030
76%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 2
Files 145
Run time 3min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
3030

Pull #2176

jenkins

GitHub 
Merge 536e12a15 into aa33b060c
Pull Request #2176: [ADAM-2172] Rename reads to alignments in methods where appropriate

13 of 13 new or added lines in 4 files covered. (100.0%)

6818 of 8995 relevant lines covered (75.8%)

0.76 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
60.79
 -0.88% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
93.75
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFragments.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
62.96
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala
1
93.02
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
64.77
 5.68% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
79.86
 -0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
1
89.01
 -1.1% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
84.62
 -7.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
1
81.82
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
69.23
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
96.23
 -3.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
2
63.64
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
2
84.07
 -0.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
72.73
 -1.82% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
85.71
 -1.79% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
4
60.79
 -0.88% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
7
76.47
 0.28% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 3030.1 0
2 3030.2 145
75.8
Source Files on build 3030