bigdatagenomics / adam / 3025

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 2
Files 145
Run time 5min
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3025

Pull #2175

jenkins

GitHub 
Merge 0b3b45b95 into 05d474a9a
Pull Request #2175: adding alt implementation of FastaSequenceConverter

68 of 68 new or added lines in 2 files covered. (100.0%)

6819 of 8992 relevant lines covered (75.83%)

0.76 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
5
92.54
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
94.64
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
71.15
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
88.89
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
66.67
 -3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
90.0
 -1.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
89.01
 -1.1% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
84.62
 -7.69% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
1
72.73
 -9.09% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
86.73
 0.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
70.91
 -1.82% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
61.36
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
80.61
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
80.09
 -0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
2
94.38
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
90.76
 -1.09% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
3
60.35
 -1.32% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
85.71
 -2.68% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
9
76.19
 -0.09% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 3025.1 145
75.83
2 3025.2 0
Source Files on build 3025