STAMP-project / dspot / 2034

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Refactor: inputs management FIX #798 (#808)

* feat: add setup methods to set all the values that come from the command line

* refactor: no more use of camel case in options

* refactor: all the configuration in done now in one place

* refactor: the example is now done as a normal configuration to avoid redundant code

* style: remove unused imports

* fix: update API in dspot-prettifier

* test: update command line option

* fix: check not null

* fix: the key of with comment option

* fix: do not always use the pit mutant score selector

* test: update test with new command line option name

* fix: use initialize

* fix: check the input of test criterion before creating test criterion

* style: remove unused imports

* feat: let now the user to specify an absolute path for others paths

* refactor: factorize the check and substring

* fix: substring now paths to have relative path instead of absolute paths

* refactor: factorize the code to manage relative paths and make it visible

* fix: change absolute paths by relative paths

146 of 146 new or added lines in 6 files covered. (100.0%)

4796 of 5594 relevant lines covered (85.73%)

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