bigdatagenomics / adam / 2982
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 1
Files 143
Run time 6s
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2982

Pull #2056

jenkins

GitHub 
Merge 9841310b6 into e8ff4b249
Pull Request #2056: [ADAM-2044] Update Spark version to 2.4.3, add move to Scala 2.12 script

167 of 167 new or added lines in 20 files covered. (100.0%)

6741 of 8546 relevant lines covered (78.88%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
5.71
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
8.7
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
89.47
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Fasta2ADAM.scala
1
61.82
 -5.45% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
76.52
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset.scala
1
84.72
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentDataset.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantDataset.scala
2
84.0
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
2
63.64
 3.03% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
3
85.11
 -2.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
3
87.18
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
3
51.91
 0.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
3
79.11
 -0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
18
60.79
 -1.32% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
94.64
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
86.67
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
88.64
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
62.96
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala
1
95.35
 1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
64.77
 5.68% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
79.11
 -0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
97.75
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
85.11
 -2.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
91.57
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
83.84
 -1.01% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeDataset.scala
1
72.73
 -9.09% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
92.86
 -3.57% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
69.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
90.0
 -2.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
3
61.82
 -5.45% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
60.79
 -1.32% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
80.61
 -0.24% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
10
91.84
 -0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2982.1 143
78.88
Source Files on build 2982