Neuroinflab / kCSD-python / 210
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Jobs 4
Files 16
Run time 58s
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ccluri 
Figures (#90)

* Update KCSD.py

* Update kCSD1D_test_fig1_and_fig2.py

* Update kCSD1D_test_fig1_and_fig2.py

* Update KCSD.py

In cross-validation name errs changed to self.errs

* KCSD and L-curve update (#72)

* Update KCSD.py

* Update kCSD1D_test_fig1_and_fig2.py

* Update kCSD1D_test_fig1_and_fig2.py

* Update KCSD.py

In cross-validation name errs changed to self.errs

* changing the folder structure

* static_R_code update

* fig fonts and layout correction issue #74

* Delete kCSD1D_test_fig1_and_fig2_staticR.py

* Delete kCSD1D_test_fig1_and_fig2.py

* issue #74 updatte

* Update kCSD1D_test_fig1_and_fig2_v2.py

* New atribute in KCSD class

I would like to include new auxiliary atribute of the KCSD class "own_est" which is an array of shape (number of dimensions 2 or 3, number of csd points coordinates) .
It allows to reconstruct CSD only in given set of points (i.e. body of neuron) and work only when the array is not empty (default value is np.array([])).

* Update KCSD.py

Two new classes oKCSD2D and oKCSD3D to estimate CSD at exact given location. Method takes parameter  own_src(#dimensions, #spatial coordinates)

* Update KCSD.py

* Update KCSD.py

* update 74

Tests for oKCSD2D and oKCSD3d

* kcsd_test with oKCSD2D and oKCSD3D

* Update kcsd_tests.py

* Update figures/kCSD_properties/kCSD1D_test_fig1_and_fig2_v2.py

Co-Authored-By: wsredniawa <32837003+wsredniawa@users.noreply.github.com>

* tests update oKCSD

* Update kcsd_tests.py

* Update kcsd_tests.py

* Update kcsd_tests.py

*  Correct super execution

Make super execution compatible with Python2. Switch kwargs.pop('own_est') with super execution otherwise an exception is raised in KCSD because of unnkown attribute.

* Change setUp to test_2D and test_3D

Tests were not running

* Update kCSD1D_test_fig1_and_fig2_v2.py

Corrected parameter name noise_lvl_n to noises

* Seperation of src and est loc... (continued)

1751 of 2858 relevant lines covered (61.27%)

2.45 hits per line

Jobs
ID Job ID Ran Files Coverage
1 210.1 (DISTRIB="conda" PYTHON_VERSION="2.7" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" SIX_VERSION="1.10.0" COVERAGE="true") 0
61.06
 Travis Job 210.1
2 210.2 (DISTRIB="conda" PYTHON_VERSION="3.5" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" SIX_VERSION="1.10.0" COVERAGE="true") 0
61.23
 Travis Job 210.2
3 210.3 (DISTRIB="conda_min" PYTHON_VERSION="2.7" SIX_VERSION="1.10.0" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" COVERAGE="true") 0
61.06
 Travis Job 210.3
4 210.4 (DISTRIB="conda_min" PYTHON_VERSION="3.4" SIX_VERSION="1.10.0" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" COVERAGE="true") 0
61.23
 Travis Job 210.4
Source Files on build 210