bigdatagenomics / adam / 4260

DEFAULT BRANCH: master
Ran
Jobs 1
Files 143
Run time 7s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
4260

push

jenkins

Michael L Heuer 
Replace utils.Logger with grizzled.slf4j.Logger.

118 of 118 new or added lines in 36 files covered. (100.0%)

6743 of 8544 relevant lines covered (78.92%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
5.71
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1
8.7
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1
89.47
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Fasta2ADAM.scala
1
87.23
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
87.18
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
89.77
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
53.49
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala
1
61.54
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/OutFormatter.scala
1
82.74
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureDataset.scala
1
84.07
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
90.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
91.3
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
64.86
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
84.91
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextDataset.scala
1
98.89
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
2
51.61
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
2
90.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MarkDuplicates.scala
3
92.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
64.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
4
95.02
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
7
62.11
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
80.0
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FileSystemUtils.scala
1
86.21
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
4
83.05
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SnpTable.scala
5
88.89
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
13
53.49
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala
49
92.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
170
51.61
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
Jobs
ID Job ID Ran Files Coverage
1 4260.1 143
78.92
Source Files on build 4260