neuropoly / spinalcordtoolbox / 10814
67%
master: 59%

LAST BUILD BRANCH: lr/coverage
DEFAULT BRANCH: master
Ran
Jobs 3
Files 2224
Run time 27min
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10814

Pull #2218

travis-ci

web-flow 
changed file input as list for the im and seg case
Pull Request #2218: Refactoring to allow use of im AND seg in the registration process

25 of 25 new or added lines in 1 file covered. (100.0%)

118932 of 448334 relevant lines covered (26.53%)

0.3 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
20
74.88
 -6.47% scripts/sct_register_multimodal.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
33.33
 -1.33% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/csc.py
1
93.18
 -2.27% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/signal/__init__.py
1
33.73
 -0.4% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/ndimage/interpolation.py
1
62.96
 -0.26% spinalcordtoolbox/straightening.py
1
80.0
 -1.43% scripts/sct_dice_coefficient.py
1
88.89
 -3.7% testing/test_sct_register_multimodal.py
2
74.0
 -0.67% scripts/sct_compute_hausdorff_distance.py
2
36.9
 -0.3% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/linalg/linalg.py
2
51.24
 -0.38% scripts/msct_parser.py
2
92.76
 -1.32% scripts/sct_apply_transfo.py
2
88.71
 -3.23% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/linalg/blas.py
2
30.0
 -5.0% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/linalg/misc.py
2
88.89
 -11.11% spinalcordtoolbox/centerline/curve_fitting.py
2
30.12
 -0.6% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/skimage/color/colorconv.py
2
34.57
 -1.23% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/_lib/_util.py
3
52.82
 -0.46% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/nibabel/nifti1.py
3
33.87
 -0.8% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/skimage/transform/_geometric.py
3
58.59
 -1.17% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/index_tricks.py
3
85.56
 -3.33% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/core/_methods.py
3
20.23
 -0.87% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/arraypad.py
3
91.8
 -4.92% scripts/sct_concat_transfo.py
3
27.94
 -0.14% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/generic.py
3
72.09
 -6.98% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/ndimage/_ni_support.py
4
49.46
 -4.3% spinalcordtoolbox/centerline/core.py
4
44.64
 -1.79% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/indexes/numeric.py
4
90.86
 -2.29% scripts/sct_create_mask.py
5
30.33
 -0.51% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/series.py
6
62.5
 -1.7% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/core/fromnumeric.py
6
39.79
 -3.14% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/skimage/transform/_warps.py
6
65.95
 -1.17% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/nibabel/volumeutils.py
6
33.33
 -22.22% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/skimage/filters/_gaussian.py
7
17.12
 -1.36% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/utils.py
8
57.89
 -5.26% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/twodim_base.py
8
74.77
 -3.74% spinalcordtoolbox/reports/slice.py
9
45.38
 -3.78% scripts/sct_crop_image.py
9
36.77
 -0.48% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/indexes/base.py
10
74.88
 -6.47% scripts/sct_register_multimodal.py
10
42.64
 -1.0% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/pandas/core/internals/managers.py
10
13.43
 -4.63% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/csr.py
10
57.38
 -8.2% spinalcordtoolbox/metadata.py
10
31.65
 -0.84% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/function_base.py
12
67.05
 -13.64% scripts/sct_straighten_spinalcord.py
12
15.63
 -4.17% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/signal/windows/windows.py
14
15.91
 -15.91% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/linalg/decomp_svd.py
14
9.15
 -1.06% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/stats/stats.py
15
46.54
 -3.58% scripts/sct_label_utils.py
17
55.27
 -2.89% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/core/numeric.py
17
24.28
 -3.75% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/base.py
17
31.44
 -4.02% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/polynomial.py
20
30.46
 -5.08% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/ndimage/filters.py
20
36.62
 -2.43% scripts/sct_utils.py
21
58.24
 -23.08% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/dipy/denoise/noise_estimate.py
23
24.73
 -12.64% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/data.py
33
61.46
 -5.73% spinalcordtoolbox/image.py
36
74.37
 -13.0% spinalcordtoolbox/reports/qc.py
38
44.55
 -12.54% scripts/sct_maths.py
42
12.7
 -16.67% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/sputils.py
44
11.91
 -15.88% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/lib/histograms.py
45
11.43
 -25.71% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/optimize/_minimize.py
52
14.48
 -17.93% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/coo.py
60
23.93
 -25.64% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/numpy/matrixlib/defmatrix.py
70
10.5
 -10.36% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/sparse/compressed.py
226
5.74
 -18.8% /home/travis/virtualenv/python2.7.15/lib/python2.7/site-packages/scipy/optimize/optimize.py
Jobs
ID Job ID Ran Files Coverage
1 10814.1 2223
26.49
 Travis Job 10814.1
2 10814.2 (SCT_MINICONDA=2) 73
65.67
 Travis Job 10814.2
3 10814.3 (SCT_MINICONDA=2) 107
66.32
 Travis Job 10814.3
Source Files on build 10814