Ensembl / ensembl-hive / 3642

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travis-ci

Added JSON output to tweak_pipeline.pl

This commit is the result of the pull-request #62 by @mira13
Summary:
* Tweak pipeline output changed to json
* Test for tweak_pipeline output
* Waste changes revert
* Waste hcanges revert
* Init pipeline fix
* Test fix, removed unused tests.
* Tweak pipeline output with tests
* Review changes
* Brandon review changas
* Undef added, minor review fixes
* Error msgs changed, action is guaranteed
* End of support for older Perl versions
  Enabled testing on 5.26, as per our announcement. Hopefully it will work !
* Text msgs spaces aligned.
* responceStructure renamed in tweak_pipeline
* Ids converted to number, unused varible removed.
* Error msgs defined outside tweak_pipeline
* Missing field value filled.
* Medow type msf bug fix.
* Action setup refactoring
* Test fix, field is guaranteed.
* Correct values of json
* += Action is added to shash as SET
* Warning added on value can't be dumped
* Minor sintax fix
  1. Typo fix
  2. Consistent aligment of code
* Syntax and intention fixes.
* Constants rename.
* Field value set refactoring.
* Addition NewValue field includes old value.
* Tweak object type converted to constatnt.
* Exceed tab removed.
* Indentation fix
* Lines order refactoring.
* New val stringify.
* Intentions align.
* Arrow alignned in constant
* Old value print fix
* New value obtained from collection request.
* Reverse rebase wrong changes
* Values for += analysis shown as a list
* Restored the original indentation
* Correctly indent this line
* Added the information message recently introduced on master

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