4221

Ran 01 Apr 2019 08:44PM UTC

Jobs 1

Files 143

Run time 10s

Badge

Build # 4221

Build Type

push

jenkins

Committed by Michael L Heuer

Commit Message

Check output path is writeable before running transformations.

Run Details

18 of 18 new or added lines in 14 files covered. (100.0%)

6745 of 8539 relevant lines covered (78.99%)

0.79 hits per line

Lines	Coverage	∆	File
1	5.71	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1	11.11	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1	8.7	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1	80.0	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/FileSystemUtils.scala
1	7.69	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/PrintADAM.scala
1	70.91	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala

Lines	Coverage	∆	File
1	91.67	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
2	89.47	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Fasta2ADAM.scala
3	84.0	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
3	84.62	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
3	93.75	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFragments.scala
4	85.11	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
9	70.91	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
10	66.67	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
10	7.69	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/PrintADAM.scala
12	11.11	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
16	8.7	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
17	5.71	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
49	62.39	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala

ID	Job ID	Ran	Files	Coverage
1	4221.1	01 Apr 2019 08:44PM UTC	143	78.99