biocore / q2-chemistree / 96

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module for meta analyses  (#53)

* made collation and matching private

* minor changes to function description

* restructured hierarchy to call collation and matching

* added code to filter and relabel features using md5 hash

* removed collation and matching from plugin modules

* replace distance metric with jaccard

* removing backslash

* address travis syantax issues

* add imports and quotes arounf jaccard

* change dataframe to dense to allow modification

* adding import statement

* adding tests for new pipeline

* modifying tests for md5 pipleine

* adding CSIDirFmt

* making relative import statements

* adding absolute import from q2_chemistree

* tests/test_make_hierarchy.py

* remove collate fingerprint and match table frome pipeline

* aesthetic changes

* removing warnings import

* removing unused imports, adding blank lines

* removing unused imports

* fixing typo, unifrac

* function description+using inbuilt functions

* updating groupby command, md5 to string

* change class name to snake case

* change class name to snake case

* remove unused numpy import

* updating return type to DataFrame

* updating test to accomodate DataFrame output

* input DataFrame instead of biom object

* updating test tables to DataFrame

* remove unused imports

* add regex matching in exceptions

* fix indent

* fix indent

* fix indent errors

* added versions of sofware used

81 of 82 branches covered (98.78%)

Branch coverage included in aggregate %.

44 of 44 new or added lines in 3 files covered. (100.0%)

170 of 170 relevant lines covered (100.0%)

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