1645
89%
master: 89%

Ran 18 Mar 2019 06:29PM UTC

Jobs 1

Files 105

Run time 9s

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Build # 1645

Build Type

Pull #444

travis-ci

Committed by

web-flow

Commit Message

Apply the requested changes:
	- Removed merge test duplicate for _from_file option.
	- Modified combine and gnomad tests.
	- Updated the gs storage for said tests.
	- Remove legacy debugging code.
	- Refactor validation to use pipeline_common for extracting file names
	- Create files for unit tests on the fly.
	- Set PipelineMode to Large, when multiple input patterns are available.
	- Move input pattern/file validation to pipeline_common "file reading" stage to remove duplication.

Pull Request Pull Request #444: Implement file-of-patterns functionality

Run Details

152 of 152 new or added lines in 8 files covered. (100.0%)

7136 of 8016 relevant lines covered (89.02%)

0.89 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
2	27.85	0.0%	gcp_variant_transforms/testing/integration/run_preprocessor_tests.py
2	26.49	0.0%	gcp_variant_transforms/testing/integration/run_vcf_to_bq_tests.py
5	72.45	4.39%	gcp_variant_transforms/pipeline_common.py
6	0.0	0.0%	gcp_variant_transforms/vcf_to_bq_preprocess.py
10	35.68	-0.39%	gcp_variant_transforms/vcf_to_bq.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	0.0	0.0%	gcp_variant_transforms/vcf_to_bq_preprocess.py
1	26.49	0.0%	gcp_variant_transforms/testing/integration/run_vcf_to_bq_tests.py
1	27.85	0.0%	gcp_variant_transforms/testing/integration/run_preprocessor_tests.py
2	72.45	4.39%	gcp_variant_transforms/pipeline_common.py
5	35.68	-0.39%	gcp_variant_transforms/vcf_to_bq.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	1645.1	18 Mar 2019 06:29PM UTC	105	89.02	Travis Job 1645.1

googlegenomics / gcp-variant-transforms / 1645
89%
master: 89%

README BADGES
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New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1645

googlegenomics / gcp-variant-transforms / 1645 89% master: 89%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1645

googlegenomics / gcp-variant-transforms / 1645
89%
master: 89%

README BADGES
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