98: 63%

Ran 30 Mar 2015 08:29AM CUT

Jobs 1

Files 104

Run time 9s

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Build # 173

Build Type

push

travis-ci

Committed by

muffato

Commit Message

Merge branch 'master' into e80

* master: (29 commits)
  Parameters for e80
  New script to update en-masse the master database
  _check_equals has now a suicidal buddy: _assert_equals
  Doc in the Example config files is up-to-date with the main file
  bugfix: introduced a discrepancy in the species tree in the last commit
  PhyloXMLWriter for GeneTreeNodes
  Can also write GeneTreeNodes
  Check that the given objects have the right type
  fixed a typo on cyanidioschyzon_merolae
  Added a few more plants species for EG 26_79 release
  can_be_empty is only useful with wait_for rules
  Only use semaphores, not wait_for rules
  We can use semaphores because the funnel only has 1 job
  trim_anchor_align sometimes needs more memory
  Pipeline-wide parameters don't have to be redefined in the analysis
  Unused at the moment
  Connect branch #2 to pecan_high_mem
  "region" is unused
  New mlss-tags for the size of the blocks
  make perlcritic happy
  ...

Run Details

7734 of 13661 relevant lines covered (56.61%)

735.9 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
2	173.2 (COVERALLS=true)	30 Mar 2015 08:29AM CUT	104	56.61	Travis Job 173.2

Source Files on build 173

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Coverage	File	Lines	Relevant	Covered	Missed	Hits/Line
2.17	modules/Bio/EnsEMBL/Compara/AlignSlice/Exon.pm	625	184	4	180	2.0
3.37	modules/Bio/EnsEMBL/Compara/SeqMember.pm	644	178	6	172	3.0
3.88	modules/Bio/EnsEMBL/Compara/Graph/NewickParser.pm	247	103	4	99	10.0
4.4	modules/Bio/EnsEMBL/Compara/Homology.pm	490	91	4	87	1.0
6.25	...dules/Bio/EnsEMBL/Compara/DBSQL/SequenceAdaptor.pm	205	80	5	75	3.0
6.45	modules/Bio/EnsEMBL/Compara/AlignedMember.pm	497	93	6	87	3.0
7.02	modules/Bio/EnsEMBL/Compara/Utils/FormatTree.pm	515	57	4	53	12.0
7.5	modules/Bio/EnsEMBL/Compara/SpeciesTreeNode.pm	142	40	3	37	10.0
7.66	modules/Bio/EnsEMBL/Compara/AlignedMemberSet.pm	895	248	19	229	2.0
8.08	modules/Bio/EnsEMBL/Compara/Utils/SpeciesTree.pm	230	99	8	91	10.0
8.24	modules/Bio/EnsEMBL/Compara/DBSQL/FamilyAdaptor.pm	321	85	7	78	1.0

Showing 1 to 10 of 104 entries

Ensembl / ensembl-compara / 173
37%
release/98: 63%

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Ensembl / ensembl-compara / 173 37% release/98: 63%

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Ensembl / ensembl-compara / 173
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release/98: 63%

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