Clinical-Genomics / MIP / 2199

99%

master: 100%

Pull #759

travis-ci

feat(bwa_mem): Refactored bwa mem recipe

- Split bwa mem recipe for "bwa mem" and "run-bwa mem" into 2
  independent recipes
- Depending on genome version either of the recipes will be initilized
- Moved get_read_group to sample_info.pm
- Created sub for getting interleaved status from sample_info hash
- Added use of get_sequencing_run_type to star aln recipe
- Added methods docs in API for Sample_info

184 of 184 new or added lines in 6 files covered. (100.0%)

23947 of 24205 relevant lines covered (98.93%)

89.21 hits per line