googlegenomics / gcp-variant-transforms / 1597
89%
master: 89%

LAST BUILD BRANCH: pysam
DEFAULT BRANCH: master
Ran
Jobs 1
Files 105
Run time 6s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
1597

Pull #444

travis-ci

web-flow 
Apply the requested changes to the PR.

 - replace all (input_pattern, input_file) inputs to input_patterns
 - add "combine" input file
 - refactor v_t_options file
 - add integration tests for preprocessor and vcf->bq with annotations
Pull Request #444: Implement file-of-patterns functionality

186 of 186 new or added lines in 7 files covered. (100.0%)

7170 of 8058 relevant lines covered (88.98%)

0.89 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
98.98
 -1.02% gcp_variant_transforms/pipeline_common_test.py
2
78.61
 5.46% gcp_variant_transforms/options/variant_transform_options.py
2
26.49
 0.0% gcp_variant_transforms/testing/integration/run_vcf_to_bq_tests.py
4
71.59
 3.54% gcp_variant_transforms/pipeline_common.py
10
0.0
 0.0% gcp_variant_transforms/vcf_to_bq_preprocess.py
16
35.08
 -0.99% gcp_variant_transforms/vcf_to_bq.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
71.59
 3.54% gcp_variant_transforms/pipeline_common.py
1
26.49
 0.0% gcp_variant_transforms/testing/integration/run_vcf_to_bq_tests.py
2
0.0
 0.0% gcp_variant_transforms/vcf_to_bq_preprocess.py
7
35.08
 -0.99% gcp_variant_transforms/vcf_to_bq.py
Jobs
ID Job ID Ran Files Coverage
1 1597.1 105
88.98
 Travis Job 1597.1
Source Files on build 1597