pymc-devs / pymc3 / 8682
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Jobs 8
Files 141
Run time 33min
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junpenglao 
Mixture random cleanup (#3364)

* WIP mixture

* Still WIP but much better performance on posterior predictive sampling. Still need to work around size issues.

* Fixed mixture random method (and also multinomial when using a Cholesky covariance matrix).

* Fixed float32 all close relative tolerance error.

* Changed the way in which we wrap the comp_dists.random method to something less hackish. At least we dont ignore lint anymore.

* Moved comp_dists type checking to __init__. Changed _comp_logp, mean and median to stack on the last axis (which should allow Mixture to work with multidimensional distributions). Changed docstring a bit. Minor change in _comp_samples to enfore dtype.

* Improved support for Mixtures of multidimensional distributions.

* Added tests for mixtures of multidimensional distributions.

* Added kwarg to generate_samples to help pass raw_size_ tuples

* Cleaned up infer_comp_dist_shapes and added docstring.

* Fixed latent component assignment for mixtures of multidimensional distributions.

* Fixed mixture of mixtures errors. The error was in broadcast_distribution_samples.

* Patched broadcast_distribution_samples. Must do a cleaner fix.

* Fixed broadcast_distribution_samples bugs. Added release notes.

* Added tests comparing mixtures to latent component models

* Added more examples to Mixture docstring.

282 of 282 new or added lines in 6 files covered. (100.0%)

18354 of 20577 relevant lines covered (89.2%)

3.34 hits per line

Jobs
ID Job ID Ran Files Coverage
1 8682.1 (FLOATX='float32' TESTCMD="--durations=10 --ignore=pymc3/tests/test_examples.py --cov-append --ignore=pymc3/tests/test_distributions_random.py --ignore=pymc3/tests/test_variational_inference.py --ignore=pymc3/tests/test_shared.py --ignore=pymc3/tests/test_smc.py --ignore=pymc3/tests/test_updates.py --ignore=pymc3/tests/test_posteriors.py --ignore=pymc3/tests/test_sampling.py") 0
73.74
 Travis Job 8682.1
2 8682.2 (FLOATX='float32' RUN_PYLINT="true" TESTCMD="--durations=10 --cov-append pymc3/tests/test_distributions_random.py pymc3/tests/test_shared.py pymc3/tests/test_smc.py pymc3/tests/test_sampling.py") 0
39.78
 Travis Job 8682.2
3 8682.3 (FLOATX='float32' TESTCMD="--durations=10 --cov-append pymc3/tests/test_examples.py pymc3/tests/test_posteriors.py") 0
25.74
 Travis Job 8682.3
4 8682.4 (FLOATX='float32' TESTCMD="--durations=10 --cov-append pymc3/tests/test_variational_inference.py pymc3/tests/test_updates.py") 0
27.33
 Travis Job 8682.4
5 8682.5 (FLOATX='float64' TESTCMD="--durations=10 --cov-append --ignore=pymc3/tests/test_examples.py --ignore=pymc3/tests/test_distributions_random.py --ignore=pymc3/tests/test_variational_inference.py --ignore=pymc3/tests/test_shared.py --ignore=pymc3/tests/test_smc.py --ignore=pymc3/tests/test_updates.py --ignore=pymc3/tests/test_posteriors.py --ignore=pymc3/tests/test_sampling.py") 0
74.76
 Travis Job 8682.5
6 8682.6 (FLOATX='float64' TESTCMD="--durations=10 --cov-append pymc3/tests/test_distributions_random.py pymc3/tests/test_shared.py pymc3/tests/test_smc.py pymc3/tests/test_sampling.py") 0
39.72
 Travis Job 8682.6
7 8682.7 (FLOATX='float64' TESTCMD="--durations=10 --cov-append pymc3/tests/test_examples.py pymc3/tests/test_posteriors.py") 0
26.06
 Travis Job 8682.7
8 8682.8 (FLOATX='float64' TESTCMD="--durations=10 --cov-append pymc3/tests/test_variational_inference.py pymc3/tests/test_updates.py") 0
27.32
 Travis Job 8682.8
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