Clinical-Genomics / MIP / 2003
93%
master: 100%

LAST BUILD BRANCH: develop
DEFAULT BRANCH: master
Ran
Jobs 1
Files 251
Run time 53s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2003

Pull #711

travis-ci

web-flow 
feat(sample_info): Replaced 'to' with 'in' in sample info subs

- Refactored a test and the Sample_info.pm module
Pull Request #711: Feature/sample info

184 of 184 new or added lines in 59 files covered. (100.0%)

21034 of 22730 relevant lines covered (92.54%)

56.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
95.24
 0.0% lib/MIP/Recipes/Analysis/Bcftools_merge.pm
1
95.89
 0.0% lib/MIP/Recipes/Analysis/Blobfish.pm
1
96.88
 0.0% lib/MIP/Recipes/Analysis/BootstrapAnn.pm
1
96.47
 0.0% lib/MIP/Recipes/Analysis/Cadd.pm
1
23.39
 0.0% lib/MIP/Recipes/Analysis/Cnvnator.pm
1
26.09
 0.0% lib/MIP/Recipes/Analysis/Delly_reformat.pm
1
90.0
 0.0% lib/MIP/Recipes/Analysis/Endvariantannotationblock.pm
1
26.67
 0.0% lib/MIP/Recipes/Analysis/Expansionhunter.pm
1
97.3
 0.0% lib/MIP/Recipes/Analysis/Fastqc.pm
1
96.0
 0.0% lib/MIP/Recipes/Analysis/Freebayes.pm
1
96.47
 0.0% lib/MIP/Recipes/Analysis/Frequency_filter.pm
1
97.59
 0.0% lib/MIP/Recipes/Analysis/Gatk_asereadcounter.pm
1
91.89
 0.0% lib/MIP/Recipes/Analysis/Gatk_gathervcfs.pm
1
98.11
 0.0% lib/MIP/Recipes/Analysis/Gatk_haplotypecaller.pm
1
95.45
 0.0% lib/MIP/Recipes/Analysis/Gatk_variantevalall.pm
1
95.45
 0.0% lib/MIP/Recipes/Analysis/Gatk_variantevalexome.pm
1
96.67
 0.0% lib/MIP/Recipes/Analysis/Gatk_variantfiltration.pm
1
97.22
 0.0% lib/MIP/Recipes/Analysis/Genebody_coverage.pm
1
96.05
 0.0% lib/MIP/Recipes/Analysis/Gffcompare.pm
1
96.63
 0.0% lib/MIP/Recipes/Analysis/Manta.pm
1
92.86
 0.0% lib/MIP/Recipes/Analysis/Multiqc.pm
1
92.86
 0.0% lib/MIP/Recipes/Analysis/Peddy.pm
1
97.33
 0.0% lib/MIP/Recipes/Analysis/Picardtools_collecthsmetrics.pm
1
90.2
 0.0% lib/MIP/Recipes/Analysis/Picardtools_mergesamfiles.pm
1
93.48
 0.0% lib/MIP/Recipes/Analysis/Plink.pm
1
96.55
 0.0% lib/MIP/Recipes/Analysis/Preseq.pm
1
96.08
 0.0% lib/MIP/Recipes/Analysis/Qccollect.pm
1
94.94
 0.0% lib/MIP/Recipes/Analysis/Rhocall.pm
1
33.77
 0.0% lib/MIP/Recipes/Analysis/Rtg_vcfeval.pm
1
95.35
 0.0% lib/MIP/Recipes/Analysis/Salmon_quant.pm
1
96.2
 0.0% lib/MIP/Recipes/Analysis/Sambamba_depth.pm
1
32.88
 0.0% lib/MIP/Recipes/Analysis/Samtools_subsample_mt.pm
1
96.36
 0.0% lib/MIP/Recipes/Analysis/Snpeff.pm
1
96.97
 0.0% lib/MIP/Recipes/Analysis/Star_fusion.pm
1
97.14
 0.0% lib/MIP/Recipes/Analysis/Stringtie.pm
1
29.35
 0.0% lib/MIP/Recipes/Analysis/Tiddit.pm
1
92.68
 0.0% lib/MIP/Recipes/Analysis/Variant_integrity.pm
1
94.85
 0.0% lib/MIP/Recipes/Analysis/Vt.pm
2
87.07
 0.0% lib/MIP/Recipes/Analysis/Bcftools_mpileup.pm
2
93.94
 0.0% lib/MIP/Recipes/Analysis/Chanjo_sex_check.pm
2
94.51
 0.0% lib/MIP/Recipes/Analysis/Gatk_splitncigarreads.pm
2
90.53
 0.0% lib/MIP/Recipes/Analysis/Mip_vcfparser.pm
2
93.33
 0.0% lib/MIP/Recipes/Analysis/Picardtools_collectmultiplemetrics.pm
2
97.18
 0.0% lib/MIP/Recipes/Analysis/Sv_annotate.pm
2
84.04
 0.0% lib/MIP/Recipes/Analysis/Sv_combinevariantcallsets.pm
3
87.95
 0.0% lib/MIP/Recipes/Analysis/Gatk_combinevariantcallsets.pm
3
93.75
 0.0% lib/MIP/Recipes/Analysis/Star_aln.pm
4
95.37
 0.0% lib/MIP/Recipes/Analysis/Gatk_baserecalibration.pm
4
52.89
 0.0% lib/MIP/Recipes/Analysis/Gatk_variantrecalibration.pm
4
90.19
 0.0% lib/MIP/Recipes/Analysis/Markduplicates.pm
4
60.62
 0.0% lib/MIP/Recipes/Analysis/Rankvariant.pm
4
83.91
 0.0% lib/MIP/Recipes/Analysis/Sv_reformat.pm
4
75.73
 0.0% lib/MIP/Recipes/Analysis/Vep.pm
5
81.22
 0.0% lib/MIP/Recipes/Analysis/Bwa_mem.pm

Uncovered Existing Lines

Lines Coverage ∆ File
1
98.51
 -1.49% lib/MIP/Recipes/Build/Star_prerequisites.pm
Jobs
ID Job ID Ran Files Coverage
1 2003.1 251
92.54
 Travis Job 2003.1
Source Files on build 2003