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Extract db-related methods from baseTrie (#74)

* Mv raw methods to DB class
* Add ScratchDB which CheckpointTrie uses
* Rename checkpoint-trie to checkpointTrie
* Add comments to scratch
* Fix linting errors
* Regenerate docs
* Rm raw methods and their tests
* Rename DB._db to DB._leveldb
* Make createScratchReadStream private
* Fix linting error and jsdoc comments
* Regenerate docs
* Add tests for db, scratch and more cases for checkpoint
* Fix checkpoint copy, add tests for checkpoint and secure copy

Signed-off-by: Sina Mahmoodi <itz.s1na@gmail.com>

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