googlegenomics / gcp-variant-transforms / 1528
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DEFAULT BRANCH: master
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Jobs 1
Files 100
Run time 6s
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<a href="https://github.com/googlegenomics/gcp-variant-transforms/commit/<a class=hub.com/googlegenomics/gcp-variant-transforms/commit/<a class="double-link" href="https://git"><a class=hub.com/googlegenomics/gcp-variant-transforms/commit/93b8cd3832725f9a4856aac90beb6f2ee75923ca">93b8cd383<a href="https://github.com/googlegenomics/gcp-variant-transforms/commit/93b8cd3832725f9a4856aac90beb6f2ee75923ca">&lt;a href=&quot;https://github.com/googlegenomics/gcp-variant-transforms/commit/93b8cd3832725f9a4856aac90beb6f2ee75923ca&quot;&gt;&amp;quot;&amp;gt;Revert &amp;quot;Scalable vep annotation in VT&amp;quot; (#432)

* Revert &amp;quot;Extract common logic out of merge_header_definitions.py (#431)&amp;quot;

This reverts commit &lt;/a&gt;&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/googlegenomics/gcp-variant-transforms/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/googlegenomics/gcp-variant-transforms/commit/49131f3b910a715e82831f59b71c3db0baae2677&quot;&gt;49131f3b9&lt;/a&gt;&quot;&gt;49131f3b9</a><a href="https://github.com/googlegenomics/gcp-variant-transforms/commit/93b8cd3832725f9a4856aac90beb6f2ee75923ca">.

* Revert &quot;Scalable vep annotation in VT (#430)&quot;

This reverts commit </a><a class="double-link" href="https://github.com/googlegenomics/gcp-variant-transforms/commit/<a class="double-link" href="https://github.com/googlegenomics/gcp-variant-transforms/commit/933b51611a4fefaac53b336b99076bcc2701ce6a">933b51611">933b51611.

52 of 52 new or added lines in 7 files covered. (100.0%)

6742 of 7549 relevant lines covered (89.31%)

0.89 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
72.73
 4.67% gcp_variant_transforms/pipeline_common.py
1
0.0
 0.0% gcp_variant_transforms/vcf_to_bq_preprocess.py
5
81.75
 -1.3% gcp_variant_transforms/libs/annotation/vep/vep_runner.py
10
35.16
 3.84% gcp_variant_transforms/vcf_to_bq.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
35.16
 3.84% gcp_variant_transforms/vcf_to_bq.py
1
0.0
 0.0% gcp_variant_transforms/vcf_to_bq_preprocess.py
2
87.23
 -5.17% gcp_variant_transforms/libs/annotation/vep/vep_runner_util.py
3
81.75
 -1.3% gcp_variant_transforms/libs/annotation/vep/vep_runner.py
Jobs
ID Job ID Ran Files Coverage
1 1528.1 100
89.31
 Travis Job 1528.1
Source Files on build 1528