1520
89%

Ran 21 Jan 2019 07:10PM UTC

Jobs 1

Files 101

Run time 28s

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Build # 1520

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Scalable vep annotation in VT (#430)

This PR improves the current annotation pipeline by:
- Add option '--shard_variants' to shard the input files before annotations.
- Add option '--run_with_garbage_collection' to clean up the VMs in case of failure or cancellation.
- Distribute the annotation workload to VMs more evenly based on the number of variants rather than the number of files.
- Add Integration tests and published a new VEP image.

TODO: update the doc.
Tested: unit tests  & integration tests

Run Details

6840 of 7717 relevant lines covered (88.64%)

0.89 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	1520.1	21 Jan 2019 07:10PM UTC	0	88.64	Travis Job 1520.1

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