bigdatagenomics / adam / 4113

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Jobs 1
Files 142
Run time 20s
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Frank Austin Nothaft 
 Refactor AlignmentRecord, RecordGroup, and ProcessingStep (#2113)

Refactor AlignmentRecord, RecordGroup, and ProcessingStep.

210 of 210 new or added lines in 29 files covered. (100.0%)

6743 of 8521 relevant lines covered (79.13%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
3.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
1
84.72
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentDataset.scala
1
96.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
2
5.88
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
2
93.52
 1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
79.34
 -0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
2
90.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MarkDuplicates.scala
3
62.22
 2.22% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
0.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala
4
92.19
 -0.82% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
17
62.96
 adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
94.64
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
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94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
69.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
62.22
 2.22% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
90.48
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
64.77
 4.55% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
93.52
 1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
82.07
 0.24% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
65.63
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
91.43
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
91.43
 -0.57% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
81.82
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
85.84
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
0.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala
2
79.34
 -0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
3
87.04
 -1.85% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
5
68.52
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
12
92.19
 -0.82% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 4113.1 142
79.13
Source Files on build 4113