MikeHeiber / Excimontec / 218

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master: 94%

Pull #77

travis-ci

Documentation Update 2

-Updated Changelog to note the changes in this commit
-Updated Doxygen documentation
-Added header guards to Exciton, Polaron, OSC_Sim, and Parameters class header files
-Added API documentation for Polaron, Parameters, and OSC_Sim classes
-Revised API documentation for the Exciton class
-Removed markdown files from the generated docuementation
-Added KMC_Lattice documentation to the docs
-Updated parameters_default.txt default morphology file format to remove the compression indicator suffix
-Updated Exciton class constructor to require user to specify the spin state of the new exciton
-Updated main.cpp output of ToF results by renaming the transient current to current density to be more accurate about the type of data produced
-Updated OSC_Sim class getSiteEnergy and getSiteType functions to check for the validity of the input coordinates and generate an error instead of throwing an exception
-Updated OSC_Sim class calculateDOSCorrelation functions by changing scope from public to private
-Updated test.cpp by correcting several spelling mistakes in the test comments

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