CamDavidsonPilon / lifelines / 1478

85%

master: 86%

push

travis-ci

0.16.0 (#577)

* Remove predict_log_hazard_relative_to_mean (#574)

* Remove lifelines.estimation (#576)

* Remove lifelines.estimation module and fix fallout

* Use namespace provided by __init__ to further tidy imports

* some refactor of residuals

* wip

* some more refactoring of residuals and how strata are handeled - I kinda like this

* linting

* rebase with master and 0.15.4

* schoenfeld residuals done

* improvements to plotting (using errorbars), and more residuals stuff

* martingale residuals work

* more residuals, playing with the api

* Decrease the McCabe complexity of plot_estimate by introducing a config class to pre-process inputs (#581)

* linting

* scaled shoenfelds are in

* wip

* 0.16.0 Formatting and address linting errors (#583)

* formatting

* address linting errors

* add TODO comments

* broke StatisticalResult class, need to update tests, but proportional test is now present

* lints

* really nice additions to StatisticalResult. I finally got rid of that _gross_ pairwise_logrank_test dataframe, and fit it nicely into StatisticalResult.

* Enforce 2DP when printing summary (#585)

* Enforce 2DP when printing summary

* Update statistics.py

* Markups to PR 581 (#584)

* lint

* drop py3.4 support

* fixing broken tests; god bless unit testing

* lint and add test for log time ph test

* new format for p-values, and replace ctv plot with the new one

* docs and lints

* Decrease McCabe complexity of concordance methods (#587)

Break up concordance and BTree from utils.py into separate files

* lint and fix statistics p-values

* refactor print_summary to allow user to specify number of decimal points, default =2

* fix print_summary

* working on check_assumptions function

* more test for pr.hz. test

* more check_assumptions, and fix all tests

* adding examples folder

* add pytest-icdiff (#589)

* add pytest-icdiff

* python ... (continued)

677 of 677 new or added lines in 13 files covered. (100.0%)

2311 of 2706 relevant lines covered (85.4%)

2.56 hits per line