bigdatagenomics / adam / 2910
79%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 1
Files 142
Run time 14s
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2910

Pull #2097

jenkins

GitHub 
Merge 7a1ccc8d8 into a8bbc720d
Pull Request #2097: [ADAM-1986] Add java-specific methods where missing.

45 of 45 new or added lines in 9 files covered. (100.0%)

6697 of 8512 relevant lines covered (78.68%)

0.79 hits per line

New Missed Lines in Diff

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84.91
 -1.63% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextDataset.scala
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93.33
 -1.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantDataset.scala
2
75.45
 -1.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset.scala
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84.72
 -1.64% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentDataset.scala
2
83.84
 -1.58% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeDataset.scala
6
82.74
 -2.52% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureDataset.scala
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50.88
 -0.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
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79.58
 -1.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala

Uncovered Existing Lines

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1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
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71.15
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
95.35
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
64.81
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
50.88
 -0.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
1
91.43
 -1.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
79.58
 -1.39% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
1
89.01
 -1.1% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
97.75
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
84.91
 -1.63% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextDataset.scala
1
62.96
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
61.33
 -0.44% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
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81.46
 -0.24% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
90.29
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
3
93.52
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
3
95.52
 -4.48% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
3
84.07
 -0.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
86.79
 -2.83% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
5
61.36
 -2.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
11
91.84
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2910.1 142
78.68
Source Files on build 2910