1479
87%
master: 89%

Ran 20 Dec 2018 06:48PM UTC

Jobs 1

Files 98

Run time 12s

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Build # 1479

Build Type

Pull #335

travis-ci

Committed by

web-flow

Commit Message

Creates PoC pipeline to estimate disk usage of vcf_to_bq on Dataflow.

The pipeline uses raw file size and raw+encoded sizes of a short snippet at beginning of VCF files to
estimate the encoded size for a commit. The major blocking bug is that when the snippets are being read from VCFs in an
encoded format, lines are being read more than once.

Pull Request Pull Request #335: Add a PoC disk_estimator feature to the vcf_to_bq preprocessor.

Run Details

129 of 129 new or added lines in 6 files covered. (100.0%)

6598 of 7463 relevant lines covered (88.41%)

0.88 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	95.97	0.03%	gcp_variant_transforms/beam_io/vcfio.py
1	72.11	-0.49%	gcp_variant_transforms/options/variant_transform_options.py
10	0.0	0.0%	gcp_variant_transforms/vcf_to_bq_preprocess.py
47	41.25		gcp_variant_transforms/beam_io/vcf_file_size_io.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	0.0	0.0%	gcp_variant_transforms/vcf_to_bq_preprocess.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	1479.1	20 Dec 2018 06:48PM UTC	98	88.41	Travis Job 1479.1

googlegenomics / gcp-variant-transforms / 1479
87%
master: 89%

README BADGES
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New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1479

googlegenomics / gcp-variant-transforms / 1479 87% master: 89%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1479

googlegenomics / gcp-variant-transforms / 1479
87%
master: 89%

README BADGES
x