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Reorganization of some top level modules (#2357)

There are a few top-level modules whose purpose was not fully clear and
partially as well as partially overlapping, which caused the content to
be quite unorganized and scattered. Here we reorganize these modules
after having clearly defined their purpose:

 * aiida.common: for generic utility functions and data structures
 * aiida.manage: for code that manages an AiiDA instance
 * aiida.tools: for code that interfaces with third-party libraries

The module `aiida.control` has been removed. Code that interacted with
internal components have been moved into `cmdline` or `manage` where
applicable. The `aiida.control.postgres` has been moved to the
`aiida.manage.external` module which is reserved for code that have to
interact with system wide components, such as the postgres database.

The module `aiida.utils` has been removed. Generic functionality has
been placed in `aiida.common` and more specific functionality has been
placed in the appropriate sub folders.

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