bigdatagenomics / adam / 2904
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DEFAULT BRANCH: master
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Jobs 1
Files 142
Run time 8s
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2904

Pull #2097

jenkins

GitHub 
Merge dd8bf271d into c4fa3001a
Pull Request #2097: [ADAM-1986] Add java-specific methods where missing.

53 of 53 new or added lines in 9 files covered. (100.0%)

6695 of 8522 relevant lines covered (78.56%)

0.79 hits per line

New Missed Lines in Diff

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85.26
 -0.91% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageDataset.scala
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75.45
 -1.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset.scala
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83.96
 -2.58% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextDataset.scala
2
90.67
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantDataset.scala
3
82.83
 -2.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeDataset.scala
6
79.17
 -7.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentDataset.scala
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82.23
 -3.03% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureDataset.scala
10
50.73
 -0.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
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 -3.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala

Uncovered Existing Lines

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1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
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94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
85.0
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1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
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84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
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81.83
 0.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
50.73
 -0.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
1
65.63
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
91.43
 -1.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
77.42
 -3.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala
1
89.01
 -1.1% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
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90.67
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantDataset.scala
1
84.78
 -2.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
91.43
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
82.83
 -2.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeDataset.scala
1
83.96
 -2.58% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextDataset.scala
1
92.86
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
72.22
 7.41% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
91.67
 -1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
97.01
 -2.99% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
84.07
 -0.88% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
93.02
 -3.49% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
3
88.68
 -0.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
94.38
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
6
60.0
 -1.78% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
6
92.66
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
7
60.23
 -3.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2904.1 142
78.56
Source Files on build 2904