bigdatagenomics / adam / 2892
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 1
Files 142
Run time 3090min
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2892

Pull #2095

jenkins

GitHub 
Merge d25c92bdd into 0183ef3a1
Pull Request #2095: [ADAM-2013] Add java-friendly indel realignment method that accepts reference.

22 of 22 new or added lines in 1 file covered. (100.0%)

6703 of 8466 relevant lines covered (79.18%)

0.79 hits per line

New Missed Lines in Diff

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20
80.72
 -2.74% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala

Uncovered Existing Lines

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1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
88.64
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
93.02
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
81.82
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
51.48
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala
2
61.78
 0.44% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
96.63
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
84.96
 -1.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
81.83
 -0.24% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
92.42
 0.47% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
3
62.5
 1.14% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
88.68
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
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68.52
 -5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
Jobs
ID Job ID Ran Files Coverage
1 2892.1 142
79.18
Source Files on build 2892