qiita-spots / qp-deblur / 204

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travis-ci

generate_tree_from_fragments cmd line utility added (#50)

* Added cmd-line entrypoint

Added cmd-line entrypoint for generating a phylogenic tree from a given
collection of fragments.

* Mods to integrate w/Qiita Post-Processing

* Remove comment

* remove_unmatched_fragments_from_biom added

* flake8

* Resolve spelling error

* fp_fragments renamed to fp_archive

* Added test for generate_tree_from_fragments cmd

Removed duplicate tearDown() method definition in test_deblur.py.

* unit test for remove_unmatched_fragments_from_biom cmd

* removed print statements

* Merged gen_tree and rm_unmatched_frag

Merged the functionality of rm_unmatched_frag with gen_tree, because
it's unlikely rm_unmatched_frag would ever be called on its own.

* Restored second tearDown() method.

It was part of another class.

91 of 97 branches covered (93.81%)

12 of 12 new or added lines in 1 file covered. (100.0%)

187 of 199 relevant lines covered (93.97%)

0.94 hits per line