Ran
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Jobs
2
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Files
41
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Run time
10min
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README BADGES
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travis-ci
390 of 2655 branches covered (14.69%)
2068 of 6437 relevant lines covered (32.13%)
1.03 hits per line
Lines | Coverage | ∆ | File |
---|---|---|---|
1 |
95.83 |
-1.89% | tools/krona.py |
3 |
92.05 |
5.38% | tools/mafft.py |
3 |
60.53 |
47.37% | util/stats.py |
4 |
91.49 |
-2.06% | tools/trinity.py |
6 |
85.37 |
-6.53% | tools/mvicuna.py |
7 |
89.06 |
4.45% | tools/blast.py |
7 |
81.06 |
0.14% | tools/novoalign.py |
7 |
83.87 |
2.52% | tools/gatk.py |
8 |
82.22 |
-14.14% | tools/diamond.py |
9 |
85.71 |
-2.22% | tools/last.py |
10 |
83.1 |
1.28% | tools/bmtagger.py |
19 |
88.3 |
3.3% | tools/samtools.py |
21 |
78.91 |
31.15% | util/cmd.py |
21 |
42.25 |
-2.39% | tools/tbl2asn.py |
30 |
79.33 |
-13.07% | tools/kraken.py |
33 |
73.12 |
1.39% | interhost.py |
33 |
43.78 |
-0.43% | util/vcf.py |
35 |
58.17 |
30.39% | tools/snpeff.py |
37 |
28.71 |
15.45% | util/genbank.py |
38 |
76.12 |
1.84% | tools/mummer.py |
52 |
69.05 |
-18.25% | tools/bwa.py |
67 |
80.1 |
-8.74% | taxon_filter.py |
79 |
88.53 |
0.41% | assembly.py |
83 |
61.86 |
26.75% | ncbi.py |
85 |
82.39 |
13.37% | intrahost.py |
96 |
65.05 |
-13.58% | util/misc.py |
97 |
68.87 |
-10.87% | tools/picard.py |
100 |
83.43 |
0.76% | read_utils.py |
108 |
51.94 |
-3.34% | tools/__init__.py |
144 |
64.73 |
-6.76% | illumina.py |
154 |
71.16 |
10.29% | util/file.py |
201 |
77.14 |
5.59% | metagenomics.py |
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line | Branch Hits | Branch Misses |
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