10023
67%

Ran 26 Oct 2018 08:36PM UTC

Jobs 2

Files 77

Run time 8min

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Build # 10023

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

sct_extract_metric: Do not zero negative values (#2049)

* sct_extract_metric: Do not zero negative values

Fixes #2048

* sct_extract_metric: Set label to 0 for outlier values

When extracting metrics, the previous implementation set data=0 for outlier data (inf, -inf, nan, etc.), which produced bias in the computed metric. Here, we set the label voxel to 0 instead so this voxel is not used during the computation of the metric.

* extract_metric: Added flag -discard-neg-val

This flag enables the user to discard or keep (default behavious) negative values.

* test_sct_extract_metric: Updated groud-truth

To accommodate the latest change in sct_extract_metric about handling of negative values

* batch_processing: Added flag -discard-neg-val

To introduce the concept to users.

Run Details

10164 of 15562 relevant lines covered (65.31%)

1.31 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	10023.1 (SCT_MINICONDA=2 MPLBACKEND=Agg)	26 Oct 2018 08:36PM UTC	0	65.31	Travis Job 10023.1
2	10023.2 (SCT_MINICONDA=2 MPLBACKEND=Agg)	26 Oct 2018 08:44PM UTC	0	65.32	Travis Job 10023.2

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