broadinstitute / hellbender / 343
81%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 186
Run time 15s
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343

Pull #176

travis-pro

akiezun 
The rest of BQSR : BaseRecalibrator, AnalyzeCovariates, ApplyBQSR (replacememt for using PrintReads to Apply BQSR)
Pull Request #176: The rest of BQSR : BaseRecalibrator, AnalyzeCovariates, ApplyBQSR

10263 of 14864 relevant lines covered (69.05%)

0.69 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/recalibration/BaseRecalibration.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/engine/ReferenceDataSource.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/recalibration/RecalibrationArgumentCollection.java
9
100.0
 src/main/java/org/broadinstitute/hellbender/transformers/NDNCigarReadTransformer.java
10
100.0
 src/main/java/org/broadinstitute/hellbender/tools/ClipReads.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineProgram.java
15
100.0
 src/main/java/org/broadinstitute/hellbender/tools/SplitNCigarReads.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/GenomeLocParser.java
20
100.0
 src/main/java/org/broadinstitute/hellbender/utils/OverhangFixingManager.java
21
100.0
 src/main/java/org/broadinstitute/hellbender/utils/text/XReadLines.java
21
100.0
 src/main/java/org/broadinstitute/hellbender/utils/report/GATKReport.java
23
100.0
 src/main/java/org/broadinstitute/hellbender/utils/fasta/CachingIndexedFastaSequenceFile.java
29
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/SamComparison.java
38
100.0
 src/main/java/org/broadinstitute/hellbender/exceptions/UserException.java
47
100.0
 src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineParser.java
51
100.0
 src/main/java/org/broadinstitute/hellbender/utils/io/IOUtils.java
61
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/AlignmentUtils.java
68
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/ReadUtils.java
70
100.0
 src/main/java/org/broadinstitute/hellbender/tools/recalibration/RecalUtils.java
Jobs
ID Job ID Ran Files Coverage
1 343.1 (TERM=dumb) 0
69.05
 Travis Job 343.1
Source Files on build 343
Detailed source file information is not available for this build.