bigdatagenomics / adam / 2816
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 2
Files 142
Run time 2min
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2816

Pull #2053

jenkins

GitHub 
Merge a40c3f3b3 into cb11b4386
Pull Request #2053: [ADAM-2037] Support GFF3 files containing FASTA formatted sequences.

8 of 8 new or added lines in 2 files covered. (100.0%)

6627 of 8372 relevant lines covered (79.16%)

1.58 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
83.19
 -1.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
88.64
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
51.87
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
94.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
90.0
 -0.63% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
81.82
 -9.09% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
84.06
 0.26% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
90.57
 4.72% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
97.01
 0.09% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
84.78
 -2.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
2
62.16
 0.9% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
68.52
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
67.53
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
59.46
 -5.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
83.19
 -1.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
81.78
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
7
92.27
 -0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2816.1 142
79.16
2 2816.2 142
79.16
Source Files on build 2816