bigdatagenomics / adam / 2808
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 2
Files 142
Run time 3min
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2808

Pull #2045

jenkins

GitHub 
Merge 2406814ab into cb11b4386
Pull Request #2045: [ADAM-2023] Implemented Duplicate Marking algorithm in Spark SQL

127 of 127 new or added lines in 4 files covered. (100.0%)

6675 of 8441 relevant lines covered (79.08%)

1.58 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
84.4
 0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
85.07
 -1.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
5
95.8
 6.21% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MarkDuplicates.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
88.64
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
62.16
 0.9% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
93.02
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
82.03
 0.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
96.63
 2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
62.96
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
85.42
 -1.04% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
1
93.15
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
93.33
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
89.62
 3.77% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
62.5
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
84.78
 -2.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
85.32
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
72.73
 -18.18% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
4
93.09
 0.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
7
61.04
 -5.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
12
44.83
 -41.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
13
67.5
 -32.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/SingleReadBucket.scala
Jobs
ID Job ID Ran Files Coverage
1 2808.1 142
79.08
2 2808.2 142
79.08
Source Files on build 2808