bigdatagenomics / adam / 2807
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 2
Files 142
Run time 8min
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2807

Pull #2045

jenkins

GitHub 
Merge 1dd20752b into cb11b4386
Pull Request #2045: [ADAM-2023] Implemented Duplicate Marking algorithm in Spark SQL

128 of 128 new or added lines in 4 files covered. (100.0%)

6675 of 8442 relevant lines covered (79.07%)

1.58 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
84.4
 0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
85.07
 -1.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
4
96.67
 7.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MarkDuplicates.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
88.64
 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
71.15
 1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
51.87
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
90.0
 -0.63% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
81.82
 -9.09% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
93.33
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
84.4
 0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
88.68
 2.83% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
65.63
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
89.01
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
84.78
 -2.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
2
70.37
 3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
66.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
59.46
 -5.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
2
61.73
 -2.47% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
4
61.26
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
81.54
 -0.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
7
92.51
 -0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
12
44.83
 -41.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
13
67.5
 -32.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/SingleReadBucket.scala
Jobs
ID Job ID Ran Files Coverage
1 2807.1 142
79.07
2 2807.2 142
79.07
Source Files on build 2807