bigdatagenomics / adam / 2804
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 2
Files 142
Run time 1min
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2804

Pull #2045

jenkins

GitHub 
Merge 5310fcead into f1cc2cfe1
Pull Request #2045: [ADAM-2023] Implemented Duplicate Marking algorithm in Spark SQL

118 of 118 new or added lines in 2 files covered. (100.0%)

6669 of 8436 relevant lines covered (79.05%)

1.58 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
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95.73
 6.14% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MarkDuplicates.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
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 -1.14% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
62.61
 1.35% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
51.87
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
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92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
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94.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
62.96
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
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 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
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 0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
95.38
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
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 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
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 -2.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
2
68.52
 1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
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59.46
 -5.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
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89.38
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
2
72.73
 -18.18% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
3
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 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
81.66
 -0.24% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
87.74
 1.89% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
7
92.86
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
11
48.28
 -37.93% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
13
67.5
 -32.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/SingleReadBucket.scala
Jobs
ID Job ID Ran Files Coverage
1 2804.1 142
79.05
2 2804.2 142
79.05
Source Files on build 2804