neuropoly / spinalcordtoolbox / 9841
27%
master: 59%

LAST BUILD BRANCH: lr/coverage
DEFAULT BRANCH: master
Ran
Jobs 2
Files 103
Run time 10s
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9841

Pull #1996

travis-ci

web-flow 
sct_utils: add elapsed time counter (should not be here by default)
Pull Request #1996: First pass at also supporting pip installations

183 of 183 new or added lines in 28 files covered. (100.0%)

108 of 19065 relevant lines covered (0.57%)

0.01 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
0.0
 scripts/isct_check_detection.py
1
0.0
 scripts/isct_convert_binary_to_trilinear.py
1
0.0
 -29.41% scripts/msct_multiatlas_seg.py
1
0.0
 -10.6% scripts/msct_shape.py
1
0.0
 -48.32% scripts/sct_crop_image.py
1
0.0
 -81.16% scripts/sct_dice_coefficient.py
1
0.0
 scripts/sct_dmri_eddy_correct.py
1
0.0
 -60.14% scripts/sct_extract_metric.py
1
0.0
 -50.39% scripts/sct_get_centerline.py
1
0.0
 -87.9% scripts/sct_register_to_template.py
1
0.0
 -87.32% scripts/sct_resample.py
1
0.0
 -70.03% scripts/sct_testing.py
1
0.0
 -86.36% scripts/sct_warp_template.py
1
0.0
 -93.83% spinalcordtoolbox/centerline/optic.py
2
0.0
 -90.0% scripts/sct_concat_transfo.py
2
0.0
 -87.58% scripts/sct_detect_pmj.py
2
0.0
 scripts/sct_pipeline.py
2
0.0
 -72.35% scripts/sct_propseg.py
2
0.0
 -80.8% scripts/sct_register_multimodal.py
2
11.26
 -72.85% spinalcordtoolbox/deepseg_gm/deepseg_gm.py
3
0.0
 -47.54% scripts/msct_moco.py
3
0.0
 -64.02% scripts/sct_deepseg_lesion.py
6
0.0
 -49.41% scripts/sct_deepseg_sc.py
6
0.0
 scripts/sct_register_graymatter.py
7
69.77
 -16.6% spinalcordtoolbox/utils.py
19
0.0
 spinalcordtoolbox/compat/launcher.py
54
0.0
 scripts/sct_check_dependencies.py

Uncovered Existing Lines

Lines Coverage ∆ File
16
0.0
 -66.67% spinalcordtoolbox/template.py
16
69.77
 -16.6% spinalcordtoolbox/utils.py
22
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 -41.51% spinalcordtoolbox/deepseg_sc/cnn_models_3d.py
23
0.0
 -10.6% scripts/msct_shape.py
28
0.0
 -100.0% scripts/sct_compute_mscc.py
29
0.0
 -93.55% scripts/sct_dmri_concat_bvals.py
31
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 -96.88% scripts/sct_dmri_create_noisemask.py
31
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 -93.94% scripts/sct_dmri_concat_bvecs.py
34
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 -91.89% scripts/sct_dmri_transpose_bvecs.py
36
0.0
 -100.0% scripts/sct_dmri_compute_bvalue.py
39
0.0
 -100.0% scripts/sct_convert.py
45
0.0
 -91.84% scripts/sct_deepseg_gm.py
50
0.0
 -98.04% scripts/sct_fmri_compute_tsnr.py
55
0.0
 -81.16% scripts/sct_dice_coefficient.py
62
0.0
 -87.32% scripts/sct_resample.py
62
0.0
 -90.0% scripts/sct_concat_transfo.py
62
0.0
 -50.39% scripts/sct_get_centerline.py
63
0.0
 -76.83% scripts/sct_compute_snr.py
63
0.0
 -100.0% scripts/sct_compute_mtr.py
67
16.25
 -83.75% spinalcordtoolbox/deepseg_gm/model.py
67
0.0
 -72.83% scripts/sct_compute_ernst_angle.py
69
9.02
 -56.56% spinalcordtoolbox/metadata.py
69
7.41
 -85.19% spinalcordtoolbox/resample/nipy_resample.py
70
0.0
 -64.22% spinalcordtoolbox/deepseg_sc/cnn_models.py
71
0.0
 -84.52% scripts/sct_dmri_compute_dti.py
72
0.0
 -76.6% scripts/sct_download_data.py
72
0.0
 -97.3% scripts/sct_merge_images.py
75
0.0
 -93.83% spinalcordtoolbox/centerline/optic.py
85
0.0
 -47.54% scripts/msct_moco.py
87
0.0
 -91.58% scripts/sct_smooth_spinalcord.py
90
0.0
 -24.73% scripts/msct_smooth.py
92
0.0
 -86.36% scripts/sct_warp_template.py
93
0.0
 -29.41% scripts/msct_multiatlas_seg.py
106
0.0
 -57.92% scripts/msct_register_landmarks.py
108
11.26
 -72.85% spinalcordtoolbox/deepseg_gm/deepseg_gm.py
114
0.0
 -48.32% scripts/sct_crop_image.py
136
0.0
 -88.31% scripts/sct_dmri_separate_b0_and_dwi.py
138
0.0
 -87.58% scripts/sct_detect_pmj.py
142
0.0
 -78.89% spinalcordtoolbox/reports/slice.py
144
0.0
 -94.74% scripts/sct_apply_transfo.py
161
0.0
 -33.97% scripts/msct_types.py
164
0.0
 -92.66% scripts/sct_create_mask.py
166
0.0
 -94.86% scripts/sct_analyze_texture.py
169
0.0
 -87.11% spinalcordtoolbox/reports/qc.py
173
0.0
 -50.0% scripts/sct_image.py
174
0.0
 -57.62% scripts/sct_maths.py
175
0.0
 -93.58% scripts/sct_fmri_moco.py
177
0.0
 -14.04% scripts/sct_viewer.py
206
0.0
 -49.41% scripts/sct_deepseg_sc.py
207
0.0
 -62.16% scripts/sct_analyze_lesion.py
207
0.0
 -64.02% scripts/sct_deepseg_lesion.py
216
0.0
 -43.99% scripts/sct_label_utils.py
222
0.0
 -64.72% scripts/msct_gmseg_utils.py
222
0.0
 -72.35% scripts/sct_propseg.py
223
0.0
 -51.74% scripts/msct_register.py
224
0.0
 -74.67% scripts/sct_compute_hausdorff_distance.py
224
0.0
 -86.82% scripts/sct_dmri_moco.py
240
0.0
 -70.03% scripts/sct_testing.py
262
0.0
 -50.29% scripts/msct_parser.py
300
0.0
 -80.8% scripts/sct_register_multimodal.py
330
0.0
 -56.41% scripts/sct_process_segmentation.py
339
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 -60.14% scripts/sct_extract_metric.py
353
0.0
 -87.9% scripts/sct_register_to_template.py
358
0.0
 -76.06% scripts/sct_label_vertebrae.py
368
0.0
 -64.22% spinalcordtoolbox/image.py
391
0.0
 -92.0% scripts/sct_segment_graymatter.py
400
0.0
 -60.7% scripts/msct_nurbs.py
448
0.0
 -76.53% scripts/sct_straighten_spinalcord.py
Jobs
ID Job ID Ran Files Coverage
1 9841.1 103
0.57
 Travis Job 9841.1
2 9841.2 (SCT_MINICONDA=2) 103
0.57
 Travis Job 9841.2
Source Files on build 9841