1898
93%

Ran 24 Aug 2018 08:13AM UTC

Jobs 1

Files 30

Run time 3s

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Build # 1898

Build Type

push

travis-ci

Committed by

mlin

Commit Message

xAtlas calibration (#138)

- include P output field
- derive AQ from P instead of genotype likelihoods
- set min_AQ thresholds and turn on genotype revision
- set drop_filtered=false and improve FT/FILTER liftover fidelity
- set required_dp=1 (needed customized AlleleDepthHelper)
- VR combi_method=max

Run Details

68 of 68 new or added lines in 3 files covered. (100.0%)

4151 of 4451 relevant lines covered (93.26%)

947396.94 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
6	87.76	0.0%	src/discovery.cc
7	89.6	0.0%	src/genotyper_utils.h

Uncovered Existing Lines

Lines	Coverage	∆	File
6	87.76	0.0%	src/discovery.cc
9	94.22	0.0%	src/genotyper.cc
15	89.6	0.0%	src/genotyper_utils.h
20	90.55	0.0%	src/cli_utils.cc

Jobs

ID	Job ID	Ran	Files	Coverage
2	1898.2 (TRAVIS_BUILD_TYPE=Coverage)	24 Aug 2018 08:13AM UTC	30	93.26	Travis Job 1898.2

dnanexus-rnd / GLnexus / 1898
93%

README BADGES
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New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1898

dnanexus-rnd / GLnexus / 1898 93%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1898

dnanexus-rnd / GLnexus / 1898
93%

README BADGES
x