1148
87%
master: 89%

Ran 17 Aug 2018 09:46PM UTC

Jobs 1

Files 88

Run time 10s

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Build # 1148

Build Type

Pull #335

travis-ci

Committed by

web-flow

Commit Message

Creates PoC pipeline to estimate disk usage of vcf_to_bq on Dataflow.

The pipeline uses raw file size and raw+encoded sizes of a short snippet at beginning of VCF files to
estimate the encoded size for a commit. The major blocking bug is that when the snippets are being read from VCFs in an
encoded format, lines are being read more than once.

Pull Request Pull Request #335: Add a PoC disk_estimator feature to the vcf_to_bq preprocessor.

Run Details

125 of 125 new or added lines in 5 files covered. (100.0%)

5372 of 6145 relevant lines covered (87.42%)

0.87 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	98.84	-1.16%	gcp_variant_transforms/libs/preprocess_reporter.py
1	74.8	-0.61%	gcp_variant_transforms/options/variant_transform_options.py
12	0.0	0.0%	gcp_variant_transforms/vcf_to_bq_preprocess.py
37	0.0		gcp_variant_transforms/beam_io/vcf_snippet_io.py
69	0.0		gcp_variant_transforms/libs/resource_estimator.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	0.0	0.0%	gcp_variant_transforms/vcf_to_bq_preprocess.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	1148.1	17 Aug 2018 09:46PM UTC	88	87.42	Travis Job 1148.1

googlegenomics / gcp-variant-transforms / 1148
87%
master: 89%

README BADGES
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Uncovered Existing Lines

Jobs

Source Files on build 1148

googlegenomics / gcp-variant-transforms / 1148 87% master: 89%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1148

googlegenomics / gcp-variant-transforms / 1148
87%
master: 89%

README BADGES
x