broadinstitute / viral-ngs / 6538
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DEFAULT BRANCH: master
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Jobs 2
Files 41
Run time 10min
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bump pysam, samtools (#870)

samtools (and htslib) 1.7 -> 1.9
pysam 0.14.1 -> 0.15.0

1 of 1 new or added line in 1 file covered. (100.0%)

2050 of 6349 relevant lines covered (32.29%)

1.03 hits per line

Jobs
ID Job ID Ran Files Coverage
5 6538.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils") 0
72.98
 Travis Job 6538.5
6 6538.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils") 0
32.29
 Travis Job 6538.6
Source Files on build 6538
Detailed source file information is not available for this build.