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LoLab-VU / pysb / 795
75%
master: 79%

Build:
Build:
LAST BUILD BRANCH: gpu_ssa
DEFAULT BRANCH: master
Ran 23 Jul 2018 09:55PM UTC
Jobs 2
Files 97
Run time 4min
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Fix Kappa 4 multiple agent synthesis (#339)

In Kappa 4, a Ghost agent (placeholder 'dot') must be used to make
the two sides of a reaction rule match. For example, the following
two agent synthesis rule:

    Rule('synthesize_A_and_B', M() + None + None >> M() + A() + B(), k)

This was previously failing (one None was silently dropped). This
has been fixed by modifying ReactionPattern.__add__ and implementing
__radd__. The only caveat is with multiple leading Nones, which will
need to be in parentheses to avoid a TypeError from adding two Nones:

    None + (None + M())

This should also be avoidable by reordering the agents to put the
Nones last, as in the original example.

Fixes: #338

6431 of 8598 relevant lines covered (74.8%)

1.49 hits per line

Jobs
ID Job ID Ran Files Coverage
1 795.1 23 Jul 2018 09:55PM UTC 0
74.8
Travis Job 795.1
2 795.2 23 Jul 2018 10:00PM UTC 0
74.51
Travis Job 795.2
Source Files on build 795
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